Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015802350.1_cds_XP_016478878.1_7006
CDS Infomation

[gene=LOC107800233] [db_xref=GeneID:107800233] [protein=alpha-farnesene synthase-like isoform X2] [protein_id=XP_016478878.1] [location=join(8842..8964,9037..9307,9860..10223,10304..10522,10631..10772,11248..11496,11608..11756,11889..12030)] [gbkey=CDS]
Sequence

ATGCAGACTAATAAACTTCATAGTACTATTAAAAAGCAAAGTCTGCCTGAAAGGAAGATT
TGTACCTATAAACCAAACATTTGGAAATATGATCATCTACTTACTCTTACAAGTGAATAT
TCTGAAGAGAAGTACAAAGTTGAGGCTGAGAAGCTAAAAGAGGAAGTTAGTTGCACGTTT
TCAAACAGTACTATTAGTCCACTGGACCTGCTAGAGCTTATAGACAGCATTGACAAACTT
GGACTCAGTTGTTACTTTGAGGTTGAAACCAAGGAAGCTTTGGAAAAGATAATAATGTCC
GTGAAAACTAAGTCCAGCGCGAAGGAGGAGGATCTGTATGCTACTGCATTGTGCTTCAGG
CTTCTCAGGGAACATGGCCACCATGCTTCACAAGATATGTTAAAGGACTTCTTCGATGGC
AAAGGAAAGCTGAAAGTCTCAGATGTGAAAACATTGTTGGAGGTTTTGGAAGGGTCATAT
CTGAGCATGGAAGGTGAAAACTTACTAGACGACACACGATTGTTCACAACAAAAAACCTC
AAGAGCCTTGTATCTAAATCAGATTACACATTTACTAATAAGGAATATACCCTGAGTTTT
CCATTGGCATGGAGAGTGAAATGGTATGATGTTAGAAAACATATCTGTGCTCAAGAACTT
GAATGCAACAACACAAATCCAATGTTGCTCAAGTTGGCAAAACTTAACTTCAATATAATT
CAAGCCACGCACCAAAAGGATCTCAAACACGTATTAAGATGGTGGAGGAATCTTTCCATA
GTTGAAGATTTGAGCTTTACAAGGGATCGGATAGTGGAAAGCTTCTTTTGTGCTGTAGGA
GTTGCCCCTGAGCCTCGACATGGAAGCATGAGAAAATGGCTCACCAAAGTGATTGAGTTG
GTGCTAATAATAGATGATGTTTATGATATTTATGGTTCATTAGCCCAAGTGCAGCAATTC
ACTCGTGCCATAGAGAAGTGGGATCCAAATGAAGTAGAAGGGCTGCCAGAATGTATGCAG
ATCTGTTTCAGGTCATTGCATGATACAGTAGAAGAGATATCTGTTGAAATTCAACAACAA
AAGGGTGGCCTTTCAGCATTACCTTATCTGAAACAAGTGTGGGTCAACTTTTGCAAAGCT
TTGCTGTTGGAAGCAACGTGGTATCACAAAGGTCATATGCCAACACTTGAAGAGTACCTT
GATAATGGGTGGATCTCATCGTCAGGCCCTTTGCTTTCTTTACATGTGATTTTTGGTCTA
TCAAATAAAATAACAACAGAAACCCATGATTTATACGAAGATTGCCATGAAATTATTTAC
CACACTTCCGTTGTAATTCGGCTTTGCAATGACCAGGGTACCTCAGCGGCGGAGCTAGAG
AGAGGTGATGTTGCTTCATCAATTTTATGTTACATGCAACAAGAAAATGTATCAGAGGAT
GTAGCCCGAGAGCATATCGAAAGCATAATTTTGGATTCGTGGAAAAAGATCAATTACCAT
TTTAATACTGTTTCTACATCACATCGAAAACTTGTCAAGCATGTAGTAAATGAAGCACGA
ATGGCACATGTCATGTACCAATTTGGAGATGGATTTGGGGTTCAAGATGTTGAAACTCGA
GATCAAGTCTTCTTCAACTTGGTTCATCCTATTACATAA

Peptide Sequence

PEP ID

XP_016478878.1
PEP Infomation

PREDICTED: alpha-farnesene synthase-like isoform X2 [Nicotiana tabacum]
Sequence

MQTNKLHSTIKKQSLPERKICTYKPNIWKYDHLLTLTSEYSEEKYKVEAEKLKEEVSCTF
SNSTISPLDLLELIDSIDKLGLSCYFEVETKEALEKIIMSVKTKSSAKEEDLYATALCFR
LLREHGHHASQDMLKDFFDGKGKLKVSDVKTLLEVLEGSYLSMEGENLLDDTRLFTTKNL
KSLVSKSDYTFTNKEYTLSFPLAWRVKWYDVRKHICAQELECNNTNPMLLKLAKLNFNII
QATHQKDLKHVLRWWRNLSIVEDLSFTRDRIVESFFCAVGVAPEPRHGSMRKWLTKVIEL
VLIIDDVYDIYGSLAQVQQFTRAIEKWDPNEVEGLPECMQICFRSLHDTVEEISVEIQQQ
KGGLSALPYLKQVWVNFCKALLLEATWYHKGHMPTLEEYLDNGWISSSGPLLSLHVIFGL
SNKITTETHDLYEDCHEIIYHTSVVIRLCNDQGTSAAELERGDVASSILCYMQQENVSED
VAREHIESIILDSWKKINYHFNTVSTSHRKLVKHVVNEARMAHVMYQFGDGFGVQDVETR
DQVFFNLVHPIT

Transcript Sequence

Gene sequence data has not been registered.